dependabot

Author's original introduction

Comprehensive guide for configuring and managing GitHub Dependabot. Use this skill when users ask about creating or optimizing dependabot.yml files, managing Dependabot pull requests, configuring dependency update strategies, setting up grouped updates, monorepo patterns, multi-ecosystem groups, security update configuration, auto-triage rules, or any GitHub Advanced Security (GHAS) supply chain security topic related to Dependabot. For pre-commit dependency vulnerability scanning in AI coding agents via the GitHub MCP Server, this skill references the Advanced Security plugin (`advanced-security@copilot-plugins`). Use this skill when an agent needs to scan dependencies for known vulnerabilities before committing.

SkillPi interpretation

Tasks

dependabot

Audience

Use the scenarios stated in the author's introduction.

Inputs and outputs

See the complete author document; outputs have not been runtime verified by SkillPi.

Software, accounts and paid services

Check required software, accounts, costs and permissions in the full document; confirm and authorize actual file access and external services in your host. Domains referenced in the documents (not a runtime allowlist): ghcr.io, github.blog, github.com, npm.example.com, npm.internal.example.com, pypi.example.com, repo.maven.apache.org Preview changes to update, ignore and alert policies. Examples of ignoring alerts or auto-merging are not authorization. Confirm external security-plugin installation and repository permissions separately. Pin external tools from official sources and audit them separately; SkillPi has not installed or run those dependencies. The user must authorize file changes, external transfers, secrets and costs in the host tool.

Limits and differences

Functionality, version status and outcome statements in the introduction are author claims. Only pinned source and static attachment evidence were checked; runtime behavior, external services and compatibility are not guaranteed.

Testing

Not tested

Security rating and access scope

caution · Static evidence review; not a runtime safety guarantee.

Check required software, accounts, costs and permissions in the full document; confirm and authorize actual file access and external services in your host. Domains referenced in the documents (not a runtime allowlist): ghcr.io, github.blog, github.com, npm.example.com, npm.internal.example.com, pypi.example.com, repo.maven.apache.org Preview changes to update, ignore and alert policies. Examples of ignoring alerts or auto-merging are not authorization. Confirm external security-plugin installation and repository permissions separately. Pin external tools from official sources and audit them separately; SkillPi has not installed or run those dependencies. The user must authorize file changes, external transfers, secrets and costs in the host tool.

Before use, confirm and authorize actual file access, external services and network destinations in your host. This review grants no runtime permissions.

Original SKILL.md

---
name: dependabot
description: >-
  Comprehensive guide for configuring and managing GitHub Dependabot. Use this skill when
  users ask about creating or optimizing dependabot.yml files, managing Dependabot pull requests,
  configuring dependency update strategies, setting up grouped updates, monorepo patterns,
  multi-ecosystem groups, security update configuration, auto-triage rules, or any GitHub
  Advanced Security (GHAS) supply chain security topic related to Dependabot. For pre-commit
  dependency vulnerability scanning in AI coding agents via the GitHub MCP Server, this skill
  references the Advanced Security plugin (`advanced-security@copilot-plugins`). Use this skill
  when an agent needs to scan dependencies for known vulnerabilities before committing.
---

# Dependabot Configuration & Management

## Overview

Dependabot is GitHub's built-in dependency management tool with three core capabilities:

1. **Dependabot Alerts** — Notify when dependencies have known vulnerabilities (CVEs)
2. **Dependabot Security Updates** — Auto-create PRs to fix vulnerable dependencies
3. **Dependabot Version Updates** — Auto-create PRs to keep dependencies current

All configuration lives in a **single file**: `.github/dependabot.yml` on the default branch. GitHub does **not** support multiple `dependabot.yml` files per repository.

## Configuration Workflow

Follow this process when creating or optimizing a `dependabot.yml`:

### Step 1: Detect All Ecosystems

Scan the repository for dependency manifests. Look for:

| Ecosystem | YAML Value | Manifest Files |
|---|---|---|
| npm/pnpm/yarn | `npm` | `package.json`, `package-lock.json`, `pnpm-lock.yaml`, `yarn.lock` |
| pip/pipenv/poetry | `pip` | `requirements.txt`, `Pipfile`, `pyproject.toml`, `setup.py` |
| uv | `uv` | `pyproject.toml`, `uv.lock` |
| Docker | `docker` | `Dockerfile` |
| Docker Compose | `docker-compose` | `docker-compose.yml` |
| GitHub Actions | `github-actions` | `.github/workflows/*.yml` |
| Go modules | `gomod` | `go.mod` |
| Bundler (Ruby) | `bundler` | `Gemfile` |
| Cargo (Rust) | `cargo` | `Cargo.toml` |
| Composer (PHP) | `composer` | `composer.json` |
| NuGet (.NET) | `nuget` | `*.csproj`, `packages.config` |
| .NET SDK | `dotnet-sdk` | `global.json` |
| Maven (Java) | `maven` | `pom.xml` |
| Gradle (Java) | `gradle` | `build.gradle` |
| Terraform | `terraform` | `*.tf` |
| OpenTofu | `opentofu` | `*.tf` |
| Helm | `helm` | `Chart.yaml` |
| Hex (Elixir) | `mix` | `mix.exs` |
| Swift | `swift` | `Package.swift` |
| Pub (Dart) | `pub` | `pubspec.yaml` |
| Bun | `bun` | `bun.lockb` |
| Dev Containers | `devcontainers` | `devcontainer.json` |
| Git Submodules | `gitsubmodule` | `.gitmodules` |
| Pre-commit | `pre-commit` | `.pre-commit-config.yaml` |

Notes:
- pnpm and yarn both use the `npm` ecosystem value.
- Prefer `uv` ecosystem value when `uv.lock` is present; otherwise use `pip`.

### Step 2: Map Directory Locations

For each ecosystem, identify where manifests live. Use `directories` (plural) with glob patterns for monorepos:

```yaml
directories:
  - "/"           # root
  - "/apps/*"     # all app subdirs
  - "/packages/*" # all package subdirs
  - "/lib-*"      # dirs starting with lib-
  - "**/*"        # recursive (all subdirs)
```

Important: `directory` (singular) does NOT support globs. Use `directories` (plural) for wildcards.

### Step 3: Configure Each Ecosystem Entry

Every entry needs at minimum:

```yaml
- package-ecosystem: "npm"
  directory: "/"
  schedule:
    interval: "weekly"
```

### Step 4: Optimize with Grouping, Labels, and Scheduling

See sections below for each optimization technique.

## Monorepo Strategies

### Glob Patterns for Workspace Coverage

For monorepos with many packages, use glob patterns to avoid listing each directory:

```yaml
- package-ecosystem: "npm"
  directories:
    - "/"
    - "/apps/*"
    - "/packages/*"
    - "/services/*"
  schedule:
    interval: "weekly"
```

### Cross-Directory Grouping

Use `group-by: dependency-name` to create a single PR when the same dependency updates across multiple directories:

```yaml
groups:
  monorepo-deps:
    group-by: dependency-name
```

This creates one PR per dependency across all specified directories, reducing CI costs and review burden.

Limitations:
- All directories must use the same package ecosystem
- Applies to version updates only
- Incompatible version constraints create separate PRs

### Standalone Packages Outside Workspaces

If a directory has its own lockfile and is NOT part of the workspace (e.g., scripts in `.github/`), create a separate ecosystem entry for it.

## Dependency Grouping

Reduce PR noise by grouping related dependencies into single PRs.

### By Dependency Type

```yaml
groups:
  dev-dependencies:
    dependency-type: "development"
    update-types: ["minor", "patch"]
  production-dependencies:
    dependency-type: "production"
    update-types: ["minor", "patch"]
```

### By Name Pattern

```yaml
groups:
  angular:
    patterns: ["@angular*"]
    update-types: ["minor", "patch"]
  testing:
    patterns: ["jest*", "@testing-library*", "ts-jest"]
```

### For Security Updates

```yaml
groups:
  security-patches:
    applies-to: security-updates
    patterns: ["*"]
    update-types: ["patch", "minor"]
```

Key behaviors:
- Dependencies matching multiple groups go to the **first** match
- `applies-to` defaults to `version-updates` when absent
- Ungrouped dependencies get individual PRs

## Multi-Ecosystem Groups

Combine updates across different package ecosystems into a single PR:

```yaml
version: 2

multi-ecosystem-groups:
  infrastructure:
    schedule:
      interval: "weekly"
    labels: ["infrastructure", "dependencies"]

updates:
  - package-ecosystem: "docker"
    directory: "/"
    patterns: ["nginx", "redis"]
    multi-ecosystem-group: "infrastructure"

  - package-ecosystem: "terraform"
    directory: "/"
    patterns: ["aws*"]
    multi-ecosystem-group: "infrastructure"
```

The `patterns` key is required when using `multi-ecosystem-group`.

## PR Customization

### Labels

```yaml
labels:
  - "dependencies"
  - "npm"
```

Set `labels: []` to disable all labels including defaults. SemVer labels (`major`, `minor`, `patch`) are always applied if present in the repo.

### Commit Messages

```yaml
commit-message:
  prefix: "deps"
  prefix-development: "deps-dev"
  include: "scope"  # adds deps/deps-dev scope after prefix
```

### Assignees and Milestones

```yaml
assignees: ["security-team-lead"]
milestone: 4  # numeric ID from milestone URL
```

### Branch Name Separator

```yaml
pull-request-branch-name:
  separator: "-"  # default is /
```

### Target Branch

```yaml
target-branch: "develop"  # PRs target this instead of default branch
```

Note: When `target-branch` is set, security updates still target the default branch; all ecosystem config only applies to version updates.

## Schedule Optimization

### Intervals

Supported: `daily`, `weekly`, `monthly`, `quarterly`, `semiannually`, `yearly`, `cron`

```yaml
schedule:
  interval: "weekly"
  day: "monday"         # for weekly only
  time: "09:00"         # HH:MM format
  timezone: "America/New_York"
```

### Cron Expressions

```yaml
schedule:
  interval: "cron"
  cronjob: "0 9 * * 1"  # Every Monday at 9 AM
```

### Cooldown Periods

Delay updates for newly released versions to avoid early-adopter issues:

```yaml
cooldown:
  default-days: 5
  semver-major-days: 30
  semver-minor-days: 7
  semver-patch-days: 3
  include: ["*"]
  exclude: ["critical-lib"]
```

Cooldown applies to version updates only, not security updates.

## Security Updates Configuration

### Enable via Repository Settings

Settings → Advanced Security → Enable Dependabot alerts, security updates, and grouped security updates.

### Group Security Updates in YAML

```yaml
groups:
  security-patches:
    applies-to: security-updates
    patterns: ["*"]
    update-types: ["patch", "minor"]
```

### Disable Version Updates (Security Only)

```yaml
open-pull-requests-limit: 0  # disables version update PRs
```

### Auto-Triage Rules

GitHub presets auto-dismiss low-impact alerts for development dependencies. Custom rules can filter by severity, package name, CWE, and more. Configure in repository Settings → Advanced Security.

## PR Comment Commands

Interact with Dependabot PRs using `@dependabot` comments.

> **Note:** As of January 2026, merge/close/reopen commands have been deprecated.
> Use GitHub's native UI, CLI (`gh pr merge`), or auto-merge instead.

| Command | Effect |
|---|---|
| `@dependabot rebase` | Rebase the PR |
| `@dependabot recreate` | Recreate the PR from scratch |
| `@dependabot ignore this dependency` | Close and never update this dependency |
| `@dependabot ignore this major version` | Ignore this major version |
| `@dependabot ignore this minor version` | Ignore this minor version |
| `@dependabot ignore this patch version` | Ignore this patch version |

For grouped PRs, additional commands:
- `@dependabot ignore DEPENDENCY_NAME` — ignore specific dependency in group
- `@dependabot unignore DEPENDENCY_NAME` — clear ignores, reopen with updates
- `@dependabot unignore *` — clear all ignores for all dependencies in group
- `@dependabot show DEPENDENCY_NAME ignore conditions` — display current ignores

For the complete command reference, see `references/pr-commands.md`.

## Ignore and Allow Rules

### Ignore Specific Dependencies

```yaml
ignore:
  - dependency-name: "lodash"
  - dependency-name: "@types/node"
    update-types: ["version-update:semver-patch"]
  - dependency-name: "express"
    versions: ["5.x"]
```

### Allow Only Specific Types

```yaml
allow:
  - dependency-type: "production"
  - dependency-name: "express"
```

Rule: If a dependency matches both `allow` and `ignore`, it is **ignored**.

### Exclude Paths

```yaml
exclude-paths:
  - "vendor/**"
  - "test/fixtures/**"
```

## Advanced Options

### Versioning Strategy

Controls how Dependabot edits version constraints:

| Value | Behavior |
|---|---|
| `auto` | Default — increase for apps, widen for libraries |
| `increase` | Always increase minimum version |
| `increase-if-necessary` | Only change if current range excludes new version |
| `lockfile-only` | Only update lockfiles, ignore manifests |
| `widen` | Widen range to include both old and new versions |

### Rebase Strategy

```yaml
rebase-strategy: "disabled"  # stop auto-rebasing
```

Allow rebase over extra commits by including `[dependabot skip]` in commit messages.

### Open PR Limit

```yaml
open-pull-requests-limit: 10  # default is 5 for version, 10 for security
```

Set to `0` to disable version updates entirely.

### Private Registries

```yaml
registries:
  npm-private:
    type: npm-registry
    url: https://npm.example.com
    token: ${{secrets.NPM_TOKEN}}

updates:
  - package-ecosystem: "npm"
    directory: "/"
    registries:
      - npm-private
```

## FAQ

**Can I have multiple `dependabot.yml` files?**
No. GitHub supports exactly one file at `.github/dependabot.yml`. Use multiple `updates` entries within that file for different ecosystems and directories.

**Does Dependabot support pnpm?**
Yes. Use `package-ecosystem: "npm"` — Dependabot detects `pnpm-lock.yaml` automatically.

**How do I reduce PR noise in a monorepo?**
Use `groups` to batch updates, `directories` with globs for coverage, and `group-by: dependency-name` for cross-directory grouping. Consider `monthly` or `quarterly` intervals for low-priority ecosystems.

**How do I handle dependencies outside the workspace?**
Create a separate ecosystem entry with its own `directory` pointing to that location.

## Pre-Commit Dependency Scanning via AI Coding Agents

For scanning code changes for vulnerable dependencies inside an AI coding agent before committing, the GitHub MCP Server's `dependabot` toolset can check your dependency additions against the GitHub Advisory Database and return structured results with affected packages, severity, and recommended fixed versions. For more thorough post-commit checks, it can also run the Dependabot CLI locally to diff dependency graphs before and after your changes.

Install the **Advanced Security plugin** which provides dedicated dependency scanning tools and the `/dependency-scanning` skill.

**GitHub Copilot CLI (shell):**
```bash
# Enable the dependabot toolset for the GitHub MCP Server
copilot --add-github-mcp-toolset dependabot
```

**GitHub Copilot CLI (inside `copilot`):**
```text
> /plugin install advanced-security@copilot-plugins
```

**Visual Studio Code:**
- Add `"X-MCP-Toolsets": "dependabot"` to your GitHub MCP Server headers, or pick **Dependabot** from the toolset selector in Copilot Chat
- Install the `advanced-security` plugin, then use `/dependency-scanning` in Copilot Chat

**Example prompt:**
> Scan the dependencies I added on this branch for known vulnerabilities and tell me which versions to upgrade to before I commit.

See: [Advanced Security Plugin — Dependency Scanning Skill](https://github.com/github/copilot-plugins/blob/main/plugins/advanced-security/skills/dependency-scanning/SKILL.md)

> Announced in [Dependency scanning with GitHub MCP Server is in public preview](https://github.blog/changelog/2026-05-05-dependency-scanning-with-github-mcp-server-is-in-public-preview/) (May 2026)

## Resources

- `references/dependabot-yml-reference.md` — Complete YAML options reference
- `references/pr-commands.md` — Full PR comment commands reference
- `references/example-configs.md` — Real-world configuration examples

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